PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502413.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 177aa    MW: 20611.7 Da    PI: 8.7675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000955577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016502413.1 55 FECKTCNRKFSSFQALGGHRASH 77
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-853126No hitNo description
PfamPF139127.1E-125479IPR007087Zinc finger, C2H2
SMARTSM003550.195577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2425582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139124.5E-10103128IPR007087Zinc finger, C2H2
SMARTSM003550.44104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746104126IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVLIPTKRER EEEEEENFHS VTTMANFLML FSNQSNDYHF DNIMKYNNST TNRVFECKTC  60
NRKFSSFQAL GGHRASHKKP RLINMRELNN MQLFQLPNIK PKTHECSICG LEFGLGQALG  120
GHMRRHRAVM NNEKIQDPLR IPQVVKKSKR VLCLDLNLTP LENDHLEFNL GADSVFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771157.11e-130PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016502413.11e-130PREDICTED: zinc finger protein ZAT11-like
TrEMBLP937131e-69P93713_PETHY; PEThy;ZPT2-5
STRINGPGSC0003DMT4000605235e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-39C2H2 family protein